Bioconductor Transcription factor binding site enrichment analysis

Showing : transcription factor binding site enrichment analysis • reset

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GSEA transcription factor binding site enrichment analysis

updated 6.1 years ago by lhuang7 ▴ 50 • written 6.1 years ago by thkapell ▴ 10

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transcription factor binding site enrichment analysis bioconductor promoter analysis microarray

updated 8.1 years ago by Steve Lianoglou ★ 13k • written 9.6 years ago by svlachavas ▴ 840

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bsgenome transcription factor binding site enrichment analysis matchpwm

9.6 years ago duncp92 ▴ 20

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Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

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C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

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Teacher to dsull ▴ 40