Bioconductor Transcription factor binding site enrichment analysis

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GSEA transcription factor binding site enrichment analysis

updated 6.0 years ago by lhuang7 ▴ 50 • written 6.0 years ago by thkapell ▴ 10

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transcription factor binding site enrichment analysis bioconductor promoter analysis microarray

updated 7.9 years ago by Steve Lianoglou ★ 13k • written 9.5 years ago by svlachavas ▴ 830

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bsgenome transcription factor binding site enrichment analysis matchpwm

9.4 years ago duncp92 ▴ 20

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0

These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…

Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0

I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

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A: Up/Down Regulated GeneList from edgeR and R

Answer: How do I merge a list of GRanges?

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